Protocol vs Runtime
The Protocol is the portable product contract. It is Markdown-first, vendor-neutral, install-free, and usable manually.
The optional Runtime is a reference implementation of that contract. It offers validation, external trust, policy enforcement, safe transactions, audit/recovery, a controlled CLI, and local stdio MCP. It does not redefine Protocol semantics through implementation behavior.
Manual and direct-folder workflows are useful, but they do not receive Runtime enforcement. Controlled guarantees are limited to the documented Runtime modes and qualified local filesystems.
Higher-level architectures
Project Corpus provides durable project-owned identity and continuity. Lifecycle, recovery and orchestration frameworks can consume that substrate without becoming Protocol authority. Living Software Organism is a higher-level architecture and reference direction of this kind, not a required Project Corpus dependency or a claim that a public LSO repository/package exists. Organism functions and recovery execution contracts belong to their own layer. Manual Markdown operation remains independently useful without Runtime, MCP, a server or database.
The same boundary is explained in the English README.md and
Russian README.ru.md at the repository root. No Protocol or package version changes follow
from this non-normative clarification.